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Concentrations of inorganic dissolved macronutrients, including phosphate, nitrate plus nitrite (N+N), silicic acid, and nitrite, from phytoplankton shipboard incubation experiments and depth profiles collected on STING I cruise AE2305 on R/V Atlantic Explorer in the Gulf of Mexico from February to March 2023. This project investigates how groundwater discharge delivers important nutrients to the coastal ecosystems of the West Florida Shelf. Preliminary studies indicate that groundwater may supply both dissolved organic nitrogen (DON) and iron in this region. In coastal ecosystems like the West Florida Shelf that have very low nitrate and ammonium concentrations, DON is the main form of nitrogen available to organisms. Nitrogen cycling is strongly affected by iron availability because iron is essential for both photosynthesis and for nitrogen fixation. This study will investigate the sources and composition of DON and iron, and their influence on the coastal ecosystem. The team will sample offshore groundwater wells, river and estuarine waters, and conduct two expeditions across the West Florida Shelf in winter and summer. 

Future sea-level rise projections are characterized by both quantifiable uncertainty and unquantifiable structural uncertainty. Thorough scientific assessment of sea-level rise projections requires analysis of both dimensions of uncertainty. Probabilistic sea-level rise projections evaluate the quantifiable dimension of uncertainty; comparison of alternative probabilistic methods provides an indication of structural uncertainty. Here we describe the Framework for Assessing Changes To Sea-level (FACTS), a modular platform for characterizing different probability distributions for the drivers of sea-level change and their consequences for global mean, regional, and extreme sea-level change. We demonstrate its application by generating seven alternative probability distributions under multiple emissions scenarios for both future global mean sea-level change and future relative and extreme sea-level change at New York City. These distributions, closely aligned with those presented in the Intergovernmental Panel on Climate Change Sixth Assessment Report, emphasize the role of the Antarctic and Greenland ice sheets as drivers of structural uncertainty in sea-level change projections. 

Abstract We introduce the OATMEAL survey, an effort to measure the obliquities of stars with transiting brown dwarf companions. We observed a transit of the close-in (P_orb= 1.74 days) brown dwarf GPX-1 b using the Keck Planet Finder spectrograph to measure the sky-projected angle between its orbital axis and the spin axis of its early F-type host star (λ). We measuredλ= 6.°9 ± 10.°0, suggesting an orbit that is prograde and well aligned with the stellar equator. Hot Jupiters around early F stars are frequently found to have highly misaligned orbits, with polar and retrograde orbits being commonplace. It has been theorized that these misalignments stem from dynamical interactions, such as von Zeipel–Kozai–Lidov cycles, and are retained over long timescales due to weak tidal dissipation in stars with radiative envelopes. By comparing GPX-1 to similar systems under the frameworks of different tidal evolution theories, we argued that the rate of tidal dissipation is too slow to have re-aligned the system. This suggests that GPX-1 may have arrived at its close-in orbit via coplanar high-eccentricity migration or migration through an aligned protoplanetary disk. Our result for GPX-1 is one of few measurements of the obliquity of a star with a transiting brown dwarf. By enlarging the number of such measurements and comparing them with hot-Jupiter systems, we will more clearly discern the differences between the mechanisms that dictate the formation and evolution of both classes of objects. 

Abstract Subduction related to the ancient supercontinent cycle is poorly constrained by mantle samples. Sublithospheric diamond crystallization records the release of melts from subducting oceanic lithosphere at 300–700 km depths^1,2and is especially suited to tracking the timing and effects of deep mantle processes on supercontinents. Here we show that four isotope systems (Rb–Sr, Sm–Nd, U–Pb and Re–Os) applied to Fe-sulfide and CaSiO₃inclusions within 13 sublithospheric diamonds from Juína (Brazil) and Kankan (Guinea) give broadly overlapping crystallization ages from around 450 to 650 million years ago. The intracratonic location of the diamond deposits on Gondwana and the ages, initial isotopic ratios, and trace element content of the inclusions indicate formation from a peri-Gondwanan subduction system. Preservation of these Neoproterozoic–Palaeozoic sublithospheric diamonds beneath Gondwana until its Cretaceous breakup, coupled with majorite geobarometry^3,4, suggests that they accreted to and were retained in the lithospheric keel for more than 300 Myr during supercontinent migration. We propose that this process of lithosphere growth—with diamonds attached to the supercontinent keel by the diapiric uprise of depleted buoyant material and pieces of slab crust—could have enhanced supercontinent stability. 

Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic datasets remains a major obstacle. Today, more realistic simulations are possible thanks to large increases in the quantity and quality of available genetic data, and the sophistication of inference and simulation software. However, implementing these simulations still requires substantial time and specialized knowledge. These challenges are especially pronounced for simulating genomes for species that are not well-studied, since it is not always clear what information is required to produce simulations with a level of realism sufficient to confidently answer a given question. The community-developed framework stdpopsim seeks to lower this barrier by facilitating the simulation of complex population genetic models using up-to-date information. The initial version of stdpopsim focused on establishing this framework using six well-characterized model species (Adrion et al., 2020). Here, we report on major improvements made in the new release of stdpopsim (version 0.2), which includes a significant expansion of the species catalog and substantial additions to simulation capabilities. Features added to improve the realism of the simulated genomes include non-crossover recombination and provision of species-specific genomic annotations. Through community-driven efforts, we expanded the number of species in the catalog more than threefold and broadened coverage across the tree of life. During the process of expanding the catalog, we have identified common sticking points and developed the best practices for setting up genome-scale simulations. We describe the input data required for generating a realistic simulation, suggest good practices for obtaining the relevant information from the literature, and discuss common pitfalls and major considerations. These improvements to stdpopsim aim to further promote the use of realistic whole-genome population genetic simulations, especially in non-model organisms, making them available, transparent, and accessible to everyone. 

Lentinulais a broadly distributed group of fungi that contains the cultivated shiitake mushroom,L. edodes. We sequenced 24 genomes representing eight described species and several unnamed lineages ofLentinulafrom 15 countries on four continents.Lentinulacomprises four major clades that arose in the Oligocene, three in the Americas and one in Asia–Australasia. To expand sampling of shiitake mushrooms, we assembled 60 genomes ofL. edodesfrom China that were previously published as raw Illumina reads and added them to our dataset.Lentinula edodessensu lato (s. lat.) contains three lineages that may warrant recognition as species, one including a single isolate from Nepal that is the sister group to the rest ofL. edodess. lat., a second with 20 cultivars and 12 wild isolates from China, Japan, Korea, and the Russian Far East, and a third with 28 wild isolates from China, Thailand, and Vietnam. Two additional lineages in China have arisen by hybridization among the second and third groups. Genes encoding cysteine sulfoxide lyase (lecsl) and γ-glutamyl transpeptidase (leggt), which are implicated in biosynthesis of the organosulfur flavor compound lenthionine, have diversified inLentinula. Paralogs of both genes that are unique toLentinula(lecsl3 andleggt5b) are coordinately up-regulated in fruiting bodies ofL. edodes. The pangenome ofL. edodess. lat. contains 20,308 groups of orthologous genes, but only 6,438 orthogroups (32%) are shared among all strains, whereas 3,444 orthogroups (17%) are found only in wild populations, which should be targeted for conservation.